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Association Mapping of Verticillium Wilt Disease in a Worldwide Collection of Cotton (Gossypium hirsutum L.)

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dc.contributor.author Bardak, Adem
dc.contributor.author Celik, Sadettin
dc.contributor.author Erdogan, Oktay
dc.contributor.author Ekinci, Remzi
dc.contributor.author Dumlupinar, Ziya
dc.date.accessioned 2023-01-09T21:10:13Z
dc.date.available 2023-01-09T21:10:13Z
dc.date.issued 2021
dc.identifier.issn 2223-7747
dc.identifier.uri https://doi.org/10.3390/plants10020306
dc.identifier.uri http://acikerisim.pau.edu.tr:8080/xmlui/handle/11499/46249
dc.description.abstract Cotton (Gossypium spp.) is the best plant fiber source in the world and provides the raw material for industry. Verticillium wilt caused by Verticillium dahliae Kleb. is accepted as a major disease of cotton production. The most practical way to deal with verticillium wilt is to develop resistant/tolerant varieties after cultural practices. One of the effective selections in plant breeding is the use of marker-assisted selection (MAS) via quantitative trait loci (QTL). Therefore, in this study, we aimed to discover the genetic markers associated with the disease. Through the association mapping analysis, common single nucleotide polymorphism (SNP) markers were obtained using 4730 SNP alleles. As a result, twenty-three markers were associated with defoliating (PYDV6 isolate) pathotype, twenty-one markers with non-defoliating (Vd11 isolate) pathotype, ten QTL with Disease Severity Index (DSI) of the leaves at the 50-60% boll opening period and eight markers were associated with DSI in the stem section. Some of the markers that show significant associations are located on protein coding genes such as protein Mpv17-like, 21 kDa protein-like, transcription factor MYB113-like, protein dehydration-induced 19 homolog 3-like, F-box protein CPR30-like, extracellular ribonuclease LE-like, putative E3 ubiquitin-protein ligase LIN, pentatricopeptide repeat-containing protein At3g62890-like, fructose-1,6-bisphosphatase, tubby-like F-box protein 8, endoglucanase 16-like, glucose-6-phosphate/phosphate translocator 2, metal tolerance protein 11-like, VAN3-binding protein-like, transformation/transcription domain-associated protein-like, pyruvate kinase isozyme A, ethylene-responsive transcription factor CRF2-like, molybdate transporter 2-like, IRK-interacting protein-like, glycosylphosphatidylinositol anchor attachment 1 protein, U3 small nucleolar RNA-associated protein 4-like, microtubule-associated protein futsch-like, transport and Golgi organization 2 homolog, splicing factor 3B subunit 3-like, mediator of RNA polymerase II transcription subunit 15a-like, putative ankyrin repeat protein, and protein networked 1D-like. It has been reported in previous studies that most of these genes are associated with biotic and abiotic stress factors. As a result, once validated, it would be possible to use the markers obtained in the study in Marker Assisted Selection (MAS) breeding. en_US
dc.description.sponsorship Scientific Research Project Fund of Kahramanmaras Sutcu.Imam University [2017/2-58M] en_US
dc.description.sponsorship The Scientific Research Project Fund of Kahramanmaras Sutcu.Imam University (Project number: 2017/2-58M). en_US
dc.language.iso en en_US
dc.publisher Mdpi en_US
dc.relation.ispartof Plants-Basel en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject cotton en_US
dc.subject marker en_US
dc.subject SNP en_US
dc.subject GBS en_US
dc.subject association mapping en_US
dc.subject Verticillium dahlia Kleb en_US
dc.subject pathotype en_US
dc.subject stress genes en_US
dc.title Association Mapping of Verticillium Wilt Disease in a Worldwide Collection of Cotton (Gossypium hirsutum L.) en_US
dc.type Article en_US
dc.identifier.volume 10 en_US
dc.identifier.issue 2 en_US
dc.authorid BARDAK, Adem/0000-0002-5715-302X
dc.authorid DUMLUPINAR, Ziya/0000-0003-3119-6926
dc.authorid EKINCI, REMZI/0000-0003-4165-6631
dc.identifier.doi 10.3390/plants10020306
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.authorscopusid 36730747600
dc.authorscopusid 57202738414
dc.authorscopusid 18634330600
dc.authorscopusid 23008436000
dc.authorscopusid 14032767700
dc.authorwosid BARDAK, Adem/AAD-1635-2019
dc.authorwosid celik, sadettin/ABD-2781-2021
dc.authorwosid EKINCI, REMZI/K-2438-2018
dc.authorwosid DUMLUPINAR, Ziya/L-5827-2019
dc.department-temp [Bardak, Adem; Dumlupinar, Ziya] Kahramanmaras Sutcu Imam Univ, Fac Agr, Dept Agr Biotechnol, TR-46100 Kahramanmaras, Turkey; [Celik, Sadettin] Bingol Univ, Fac Agr, Dept Agr Biotechnol, TR-12000 Bingol, Turkey; [Erdogan, Oktay] Univ Pamukkale, Sch Appl Sci, Dept Organ Farming Business Management, TR-20600 Denizli, Turkey; [Ekinci, Remzi] Dicle Univ, Fac Agr, Dept Field Crops, TR-21280 Diyarbakir, Turkey en_US
dc.identifier.pmid 33562629 en_US
dc.identifier.scopus 2-s2.0-85100466999 en_US
dc.identifier.wos WOS:000623009000001 en_US

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